ANDREW D. RUTENBERG ANDREW D. RUTENBERG Dalhousie Physics Dalhousie

Publications

Probing the network structure of health deficits in human aging
SG Farrell, AB Mitnitski, O Theou, K Rockwood, and AD Rutenberg, Physical Review E 98 032302 (2018)
Anomalously slow transport in single-file diffusion with slow binding kinetics
Spencer Farrell and AD Rutenberg, Physical Review E 98 022114 (2018)
Polymorphism of Stable Collagen Fibrils
Sam Cameron, Laurent Kreplak, and AD Rutenberg, Soft Matter 14 4772-4783 (2018)
Unifying aging and frailty through complex dynamical networks
AD Rutenberg, AB Mitnitski, S Farrell, and K Rockwood, Experimental Gerontology 107 126 (2018)
Unlocking collagen proteolysis with a gentle pull
L Kreplak and AD Rutenberg, Biophysical Journal 114 503 (2018)
Photobleaching of randomly-rotating fluorescently-decorated particles
S Taneja and AD Rutenberg, Journal of Chemical Physics 147 104105 (2017)
Aging and frailty in Complex Networks
AB Mitnitski, AD Rutenberg, SG Farrell, and K Rockwood, Biogerontology 18 433 (2017)
Modelling autophagy selectivity by receptor clustering on peroxisomes
Aidan I Brown and Andrew D Rutenberg, Frontiers in Physics 5 14 (2017)
Network model of human aging: frailty limits and information measures
Spencer G Farrell, Arnold B Mitnitski, Kenneth Rockwood, and Andrew D Rutenberg, Physical Review E 94 052409 (2016)
alphaTAT1 controls longitudinal spreading of acetylation marks from open microtubules extremities
Nathalie Ly, Nadia Elkhatib, Enzo Bresteau, Olivier Pietrement, Mehdi Khaled, Maria Magiera, Carsten Janke, Eric Le Cam, Andrew D Rutenberg, and Guillaume Montagnac, Scientific Reports 6 35624 (2016)
Uniform spatial distribution of collagen fibril radii within tendon implies local activation of pC-collagen at individual fibrils
Andrew D Rutenberg, Aidan I Brown, and Laurent Kreplak, Physical Biology 13 046008 (2016)
A dynamical network model for age-related health deficits and mortality
Swadhin Taneja, Arnold B Mitnitski, Kenneth Rockwood, and Andrew D Rutenberg, Physical Review E 93 022309 (2016)
Single file diffusion into a semi-infinite tube
Spencer Farrell, Aidan I Brown, and Andrew D Rutenberg, Physical Biology 12 064001 (2015)
Cluster coarsening on drops exhibits strong and sudden size selectivity
Aidan I Brown and Andrew D Rutenberg, Soft Matter 11 3786 (2015)
Lateral exchange smooths the way for vimentin filaments
Laurent Kreplak and Andrew D. Rutenberg, Biophysical Journal 107 2747 (2014)
An equilibrium double-twist model for the radial structure of collagen fibrils
Aidan I Brown, Laurent Kreplak, and Andrew D. Rutenberg, Soft Matter 10 8500 (2014)
Protein translocation without specific quality control in a computational model of the Tat system
Chitra R Nayak, Aidan I Brown, and Andrew D. Rutenberg, Physical Biology 11 056005 (2014)
PEX16 contributes to peroxisome maintenance by constantly trafficking PEX3 via the ER
Alexander Aranovich, Rong Hua, Andrew D. Rutenberg, and Peter K Kim, J Cell Science 127 3675 (2014)
Circumferential gap propagation in an anisotropic elastic bacterial sacculus
Swadhin Taneja, Ben Levitan, and Andrew D. Rutenberg, Physical Review E 89 e012704 (2014)
A storage-based model of heterocyst commitment and patterning in cyanobacteria
Aidan Brown and Andrew D. Rutenberg, Physical Biology 11 016001 (2014)
PEX5 and ubiquitin dynamics on mammalian peroxisome membranes
Aidan Brown, Peter Kim, and Andrew D. Rutenberg, PLoS Computational Biology 10 e1003426 (2014)
Stuttering Min oscillations within E. coli bacteria: a stochastic polymerization model
Supratim Sengupta, Julien Derr, Anirban Sain, and Andrew D. Rutenberg, Physical Biology 9 056003 (2012)
Heterocyst placement strategies to maximize growth of cyanobacterial filaments
Aidan I. Brown and Andrew D. Rutenberg, Physical Biology 9 046002 (2012)
Reconciling cyanobacterial fixed-nitrogen distributions and transport experiments with quantitative modelling
Aidan I. Brown and Andrew D. Rutenberg, Physical Biology 9 016007 (2012)
Quantification of fluorophore copy number from intrinsic fluctuations during fluorescence photobleaching
Chitra R Nayak and Andrew D. Rutenberg, Biophysical Journal 101 2284-2293 (2011)
Monodisperse domains by proteolytic control of the coarsening instability
Julien Derr and Andrew D. Rutenberg, Physical Review E 84 011928 (2011)
Effects of Poly(L-lysine) Substrates on Attached Escherichia coli Bacteria
Keegan Colville, Nicolas Tompkins, Andrew D. Rutenberg, and Manfred H. Jericho, Langmuir 26 2639 (2010)
Small group mentoring of physics majors: the Dalhousie experience
Andrew Rutenberg, Physics in Canada 65 217 (2009)
Subcellular Min oscillations as a single-cell reporter of the action of polycations, protamine, and gentamicin on Escherichia coli
Benjamin P. B. Downing, Andrew D. Rutenberg, Ahmed Touhami, and Manfred Jericho, PLoS ONE 4(9) e7285 (2009)
Self-organization of the MinE protein ring in subcellular Min oscillations
Julien Derr, Jason T. Hopper, Anirban Sain, and Andrew D. Rutenberg, Physical Review E 80 011922 (2009).
Pulling helices inside bacteria: imperfect helices and rings
Jun F. Allard and Andrew D. Rutenberg, Physical Review Letters 102 158105 (2009).
Biological Physics of Bacteria
Andrew D. Rutenberg, CUPJ VI.3 7 (2008).
So you want to be a grad student?
Andrew D. Rutenberg, CUPJ VI.2 32 (2008).
Heterocyst patterns without patterning proteins in cyanobacterial filaments
Jun F. Allard, Alison L. Hill, and Andrew D. Rutenberg, Developmental Biology 312 427-434 (2007).
Steady-state MreB helices inside bacteria: dynamics without motors
Jun F. Allard and Andrew D. Rutenberg, Physical Review E 76 031916 (2007).
Modeling partitioning of Min proteins between daughter cells after septation in Escherichia coli
Supratim Sengupta and Andrew D. Rutenberg, Physical Biology 4, 145-153 (2007).
Clocking out: modeling phage induced lysis of E. coli
Gillian L Ryan and Andrew D. Rutenberg, Journal of Bacteriology 189, 4749 (2007).
Temperature dependence of MinD oscillation in Escherichia Coli: running hot and fast
Ahmed Touhami, Manfred Jericho, and Andrew D. Rutenberg, J. Bact. 188, 7661 (2006).
Scaling State of dry two-dimensional froths: universal angle deviations and structure
Andrew D. Rutenberg and Micah B. McCurdy, Phys. Rev. E 73, 11403 (2006).
Maximally-fast coarsening algorithms
Mowei Cheng and Andrew D. Rutenberg, Physical Review E 72 R55701 (2005).
Bacterial Biophysics
Andrew D. Rutenberg, Physics in Canada 60, 83 (2004).
Fast and Accurate Coarsening Simulation with an Unconditionally Stable Time Step
Benjamin P. Vollmayr-Lee and Andrew D. Rutenberg, Phys. Rev. E 68, 66703 (2003).
Diffusion of Asymmetric Swimmers
A.D. Rutenberg, A.J. Richardson, C.J. Montgomery. Phys. Rev. Lett. 91, 80601 (2003).
Pattern formation inside bacteria: fluctuations due to low copy number of proteins
Martin Howard and Andrew Rutenberg, Phys. Rev. Lett. 90, 128102 (2003).
Dislocations and morphological instabilities: Continuum modeling of misfitting heteroepitaxial films
Mikko Haataja, Judith Muller, A. D. Rutenberg, Martin Grant, PRB 65, 165414 (2002).
AFM Roughness Changes in Electrode materials for Li-Ion Batteries
L. Y. Beaulieu, A. D. Rutenberg, and J. R. Dahn, Microscopy and Microanalysis, 8, 422 (2002).
Dynamic compartmentalization of bacteria: accurate division in E. coli
Martin Howard, Andrew Rutenberg, and Simon de Vet, PRL 87, 278102 (2001).
Dynamics of dislocations and surface instabilities in misfitting heteroepitaxial films
Mikko Haataja, Judith Muller, A. D. Rutenberg, Martin Grant, PRB 65, 35401 (2001).
Curved Tails in Polymerization-Based Bacterial Motility
A. D. Rutenberg and M. Grant, PRE 64, 21904 (2001).
Microbial response to surface microtopography: the role of metabolism in localized mineral dissolution
Katrina J. Edwards and A. D. Rutenberg, Chemical Geology 180, 19 (2001).
Cluster Persistence: a Non-Topological Probe of Soap Froth Dynamics
W. Y. Tam, A. D. Rutenberg, B. P. Vollmayr-Lee, and K. Y. Szeto. EPL 51, 223 (2000).
Anisotropic Coarsening: Grain Shapes and Nonuniversal Persistence
A. D. Rutenberg and B. P. Vollmayr-Lee, PRL 83, 3772 (1999).
Triangular anisotropies in Driven Diffusive Systems: reconciliation of Up and Down
A. D. Rutenberg and C. Yeung, PRE 60, 2710 (1999).
Dynamical Scaling: the Two-Dimensional XY Model Following a Quench
F. Rojas and A. D. Rutenberg, PRE 60, 212 (1999).
Reaction Zones and Quenched Charged-Particle Systems with Long-Range Interactions
A. D. Rutenberg, PRE 58, 2918 (1998).
Persistence, Poisoning, and Autocorrelations in Dilute Coarsening
B. P. Lee and A. D. Rutenberg, PRL 79, 4842 (1997).
Dynamical Multiscaling in Quenched Skyrme Systems
A. D. Rutenberg , W. J. Zakrzewski and M. Zapotocky, EPL 39, 49 (1997).
Stress-free Spatial Anisotropy in Phase-Ordering
A. D. Rutenberg, PRE 54, R2181 (1996).
Non-equilibrium Phase-Ordering with a Global Conservation Law
A. D. Rutenberg, PRE 54, 972 (1996).
Comment on ``Theory of Spinodal Decomposition''
A. D. Rutenberg, PRL 76, 158 (1996).
The Energy-Scaling Approach to Phase-Ordering Growth Laws
A. D. Rutenberg and A. J. Bray, PRE 51, 5499 (1995).
Scaling Violations with Textures in Two-Dimensional Phase-Ordering
A. D. Rutenberg, PRE 51, R2715 (1995).
Phase Ordering of 2D XY Systems Below T_{KT}
A. D. Rutenberg and A. J. Bray, PRE 51, R1641 (1995).
Unwinding Scaling Violations in Phase Ordering
A. D. Rutenberg and A. J. Bray, PRL 74, 3836 (1995).
Phase Ordering Kinetics of One-Dimensional Non-Conserved Scalar Systems
A. D. Rutenberg and A. J. Bray, PRE 50, 1900 (1994).
Growth Laws for Phase Ordering
A. J. Bray and A. D. Rutenberg, PRE 49, R27 (1994).
Classical Antiferromagnets on the Kagome Lattice
David A. Huse and Andrew D. Rutenberg, PRB 45, R7536 (1992).
Elasticity of a Percolation System: Silica Smoke
J. Forsman, J. P. Harrison, and A. Rutenberg, Can. J. Phys. 65, 767 (1987).